aide

Getting Started

  • Installing AIDE
  • API examples

User Guide

  • Data Structures
  • Model Compatibility
  • ProteinModelWrapper
  • Zero-Shot Prediction
  • Supervised Learning
  • Saturation Mutagenesis
  • Building ML Pipelines
  • Caching Model Outputs
  • Position-Specific Models
  • Contributing Models to AIDE
  • Structure Prediction with SoloSeq
  • Generating MSAs with MMseqs2
  • Protein Optimization with BADASS

API Reference

  • aide_predict
    • aide_predict package
aide
  • aide_predict
  • View page source

aide_predict

  • aide_predict package
    • Subpackages
      • aide_predict.bespoke_models package
        • Subpackages
        • Submodules
        • aide_predict.bespoke_models.base module
        • Module contents
      • aide_predict.io package
        • Submodules
        • aide_predict.io.bio_files module
        • Module contents
      • aide_predict.utils package
        • Subpackages
        • Submodules
        • aide_predict.utils.alignment_calls module
        • aide_predict.utils.badass module
        • aide_predict.utils.checks module
        • aide_predict.utils.common module
        • aide_predict.utils.conservation module
        • aide_predict.utils.constants module
        • aide_predict.utils.mmseqs_msa_search module
        • aide_predict.utils.msa module
        • aide_predict.utils.plotting module
        • aide_predict.utils.soloseq module
        • Module contents
    • Submodules
    • aide_predict.patches_ module
    • Module contents
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